Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB11858.1Hypothetical protein. (291 aa)    
Predicted Functional Partners:
AKB11857.1
Hypothetical protein.
 
  
 0.975
AKB11859.1
MoxR-like ATPase in aerotolerance operon.
  
 0.923
AKB11856.1
TPR repeat containing protein.
       0.887
AKB14264.1
MoxR-like ATPase.
  
 0.772
AKB13790.1
MoxR-related protein.
 
  
 0.558
AKB12831.1
Hypothetical protein.
 
  
 0.476
AKB12294.1
MoxR-related protein.
 
  
 0.441
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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