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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB11883.1Membrane protein, putative. (311 aa)    
Predicted Functional Partners:
AKB11843.1
Hypothetical protein.
  
    0.704
AKB13549.1
Hypothetical protein.
  
    0.697
AKB13431.1
Hypothetical protein.
   
    0.602
AKB13691.1
Proline 2-methylase for pyrrolysine biosynthesis.
  
    0.593
AKB11884.1
Universal stress protein.
       0.557
AKB13447.1
CAAX amino terminal protease family protein.
  
    0.515
AKB13437.1
CAAX amino terminal protease family protein.
  
    0.512
AKB13656.1
Archaeosortase A.
  
    0.509
AKB12941.1
CAAX amino terminal protease family protein.
  
    0.505
AKB12816.1
ADP-dependent glucokinase.
  
     0.501
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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