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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB11947.1ABC transporter, ATP-binding protein. (252 aa)    
Predicted Functional Partners:
AKB12339.1
Cell division protein FtsX.
 
 0.978
AKB13311.1
ABC transporter, permease protein.
 
 0.978
AKB12474.1
ABC transporter, permease protein.
 
 0.947
AKB11946.1
ABC transporter, permease protein.
 
 
 0.939
AKB13913.1
ABC transporter, permease protein.
 
 0.898
AKB12064.1
Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1.
 
   
0.870
AKB13361.1
Hypothetical protein.
   
 
 0.759
AKB13739.1
Dipeptide transport ATP-binding protein DppF; TCDB 3.A.1.5.2.
    
0.712
AKB11945.1
Putative carboxyl-terminal-processing protease, deltaproteobacterial.
  
    0.611
rpl2
LSU ribosomal protein L8e (L2p); One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
 
   
 0.531
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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