Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB12018.1ABC transporter, ATP-binding protein. (301 aa)    
Predicted Functional Partners:
AKB12017.1
ABC transporter, permease protein.
 
  
 0.960
AKB12209.1
Multidrug ABC transporter, permease protein.
 
  
 0.839
AKB13016.1
ABC transporter, permease protein.
 
  
 0.835
AKB13315.1
ABC transporter, permease protein.
 
  
 0.833
AKB12400.1
Lipid A export ATP-binding/permease protein MsbA.
  
 0.660
AKB12787.1
Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps.
  
  
 0.656
AKB12016.1
3-oxoacyl-[acyl-carrier protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.630
AKB12019.1
Hypothetical protein.
       0.465
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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