Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB12058.1Putative permease (major facilitator superfamily). (432 aa)    
Predicted Functional Partners:
AKB12060.1
Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1.
     
 0.681
AKB12059.1
Oligopeptide transport system permease protein OppC; TCDB 3.A.1.5.1.
       0.670
AKB12062.1
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA; TCDB 3.A.1.5.1.
     
 0.599
AKB12061.1
UbiE/COQ5 methyltransferase.
       0.558
AKB13861.1
Cell surface protein.
 
     0.473
AKB12184.1
Putative phosphoglycerate mutase.
 
   
 0.470
AKB14231.1
Hypothetical protein.
 
   
 0.438
AKB14203.1
Hypothetical protein.
 
     0.430
AKB12136.1
Cell surface protein.
 
     0.419
AKB12393.1
Cell surface protein.
 
     0.416
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.