Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB12136.1Cell surface protein. (495 aa)    
Predicted Functional Partners:
AKB12324.1
Hypothetical protein.
  
     0.578
AKB11945.1
Putative carboxyl-terminal-processing protease, deltaproteobacterial.
 
     0.568
AKB11798.1
Hypothetical protein.
  
     0.556
AKB14203.1
Hypothetical protein.
  
     0.554
AKB12961.1
Digeranylgeranylglyceryl phosphate synthase.
  
     0.543
AKB12327.1
Hypothetical protein.
  
     0.529
AKB14234.1
Hypothetical protein.
  
     0.528
AKB12358.1
Hypothetical protein.
  
     0.527
AKB12942.1
Hypothetical protein.
  
     0.525
AKB12301.1
Hypothetical protein.
  
     0.514
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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