STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB12209.1Multidrug ABC transporter, permease protein. (250 aa)    
Predicted Functional Partners:
AKB12210.1
ABC transporter, ATP-binding protein.
 
  
 0.967
AKB13316.1
ABC transporter, ATP-binding protein.
 
  
 0.838
AKB12018.1
ABC transporter, ATP-binding protein.
 
  
 0.837
AKB13015.1
ABC transporter, ATP-binding protein.
 
  
 0.822
AKB13699.1
Hypothetical protein.
  
  
 0.510
AKB13519.1
ABC transporter, ATP-binding protein.
 
  
 0.483
AKB13016.1
ABC transporter, permease protein.
  
  
 
0.470
AKB12208.1
Transporter, LysE family.
     
 0.467
AKB13315.1
ABC transporter, permease protein.
 
  
 
0.463
AKB12017.1
ABC transporter, permease protein.
  
  
 
0.461
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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