Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB12340.1Hypothetical protein. (443 aa)    
Predicted Functional Partners:
AKB12339.1
Cell division protein FtsX.
 
    0.855
AKB12341.1
ABC transporter, ATP-binding protein.
 
    0.759
AKB13435.1
Hypothetical protein.
  
   
 0.702
AKB13454.1
Hypothetical protein.
 
    0.692
AKB13264.1
UbiA prenyltransferase family protein.
 
     0.634
AKB12342.1
Hypothetical protein.
 
     0.623
AKB13090.1
Cell surface protein.
 
     0.607
AKB12711.1
Hypothetical protein.
 
     0.588
AKB13744.1
Putative transcriptional regulators.
 
     0.584
AKB11891.1
Hypothetical protein.
 
     0.580
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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