Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKB12384.1Hypothetical protein. (245 aa)    
Predicted Functional Partners:
AKB13554.1
Fe-S OXIDOREDUCTASE.
  
  
 0.742
AKB13801.1
(dimethylallyl)adenosine tRNA methylthiotransferase.
  
  
 0.742
AKB12383.1
Hypothetical protein.
      
 0.714
AKB13285.1
Putative methanogenesis marker protein 17.
  
     0.713
AKB13590.1
Two-component response regulator.
  
  
 0.660
AKB13287.1
Alkylhydroperoxidase AhpD family core domain protein.
 
   
 0.646
AKB14207.1
UDP-N-acetylmuramoylalanine--D-glutamate ligase.
 
   
 0.644
AKB11777.1
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit X.
  
     0.638
AKB13399.1
Methyl coenzyme M reductase operon protein D.
  
     0.627
AKB13281.1
Putative methanogenesis marker protein 3; Belongs to the UPF0288 family.
  
     0.622
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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