Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB12438.1Amino acid transporter. (430 aa)    
Predicted Functional Partners:
AKB12285.1
Amino acid permease.
  
     0.610
AKB13002.1
Phosphate transport system permease protein PstA; TCDB 3.A.1.7.1.
     
 0.584
AKB13590.1
Two-component response regulator.
  
 
 0.525
AKB12246.1
Dimethylamine permease.
  
     0.511
AKB11926.1
Hypothetical protein.
 
 
 0.440
AKB12108.1
Proton/glutamate symport protein / Sodium/glutamate symport protein.
 
 
 0.426
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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