Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB12532.1Cell surface protein. (114 aa)    
Predicted Functional Partners:
AKB13901.1
Hypothetical protein.
 
     0.775
AKB12883.1
Peptidase S8 and S53, subtilisin, kexin, sedolisin.
 
 
 0.566
AKB12531.1
Hypothetical protein.
      0.551
AKB13109.1
Serine protease.
 
 
 0.471
AKB12221.1
Hypothetical protein; Belongs to the peptidase S8 family.
 
 
 0.409
AKB12368.1
Serine alkaline protease (subtilisin E); Belongs to the peptidase S8 family.
 
 
 0.402
AKB11926.1
Hypothetical protein.
 
 0.400
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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