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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB12559.1Hypothetical protein. (274 aa)    
Predicted Functional Partners:
AKB12560.1
Ni2+-binding GTPase involved in regulation of expression and maturation of hydrogenase.
 
  
 0.988
AKB12561.1
Hypothetical protein.
 
    0.981
AKB11946.1
ABC transporter, permease protein.
 
 
 0.781
AKB12474.1
ABC transporter, permease protein.
 
 
 0.776
AKB13311.1
ABC transporter, permease protein.
 
 
 0.776
AKB12339.1
Cell division protein FtsX.
 
 
 0.775
AKB13913.1
ABC transporter, permease protein.
 
 
 0.774
AKB13361.1
Hypothetical protein.
   
 
 0.759
AKB12562.1
Ferredoxin oxidoreductase.
 
     0.747
AKB12881.1
[NiFe] hydrogenase nickel incorporation-associated protein HypB.
  
  
 0.723
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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