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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB12562.1Ferredoxin oxidoreductase. (414 aa)    
Predicted Functional Partners:
AKB11788.1
Ferredoxin.
 
  
 0.818
AKB12353.1
Hypothetical protein; Belongs to the UPF0280 family.
 
   
 0.790
AKB12561.1
Hypothetical protein.
 
     0.779
AKB12560.1
Ni2+-binding GTPase involved in regulation of expression and maturation of hydrogenase.
 
     0.759
AKB12559.1
Hypothetical protein.
 
     0.747
AKB12563.1
tRNA S(4)U 4-thiouridine synthase (former ThiI).
       0.418
AKB11871.1
Sulfopyruvate decarboxylase - beta subunit.
       0.410
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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