Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB12564.1Hypothetical protein. (83 aa)    
Predicted Functional Partners:
AKB13236.1
Hypothetical protein.
  
     0.651
AKB11855.1
Biotin synthase-related enzyme.
 
     0.590
AKB12558.1
Biotin synthase-related enzyme.
 
     0.578
AKB12566.1
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
 
     0.574
AKB13904.1
Biotin synthase-related enzyme.
 
     0.573
AKB13285.1
Putative methanogenesis marker protein 17.
  
     0.559
AKB14133.1
Hypothetical protein.
 
     0.555
AKB12421.1
Transcriptional regulator, ArsR family.
 
     0.525
AKB12298.1
Transcriptional regulator, ArsR family.
 
     0.494
AKB12565.1
Cysteine desulfurase.
       0.485
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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