Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
AKB12621.1Succinate dehydrogenase iron-sulfur protein. (258 aa)    
Predicted Functional Partners:
AKB12620.1
Succinate dehydrogenase flavoprotein subunit.
 
 0.999
AKB11964.1
NADH-quinone oxidoreductase subunit C/D.
  
 
 0.996
AKB11965.1
NADH-quinone oxidoreductase subunit C/D.
  
 
 0.996
AKB12622.1
Fumarate hydratase class II.
 
 
 0.980
AKB12311.1
Fumarate hydratase class I, aerobic; L(+)-tartrate dehydratase beta subunit.
  
 
 0.970
AKB13796.1
Citrate synthase (si).
 
 
 0.966
AKB12310.1
Fumarate hydratase class I, aerobic; L(+)-tartrate dehydratase alpha subunit.
  
 
 0.960
AKB12618.1
Succinate-semialdehyde dehydrogenase [NADP+].
  
 
 0.945
AKB11962.1
Ketoisovalerate oxidoreductase subunit VorD.
  
 
 0.932
AKB14059.1
Energy-conserving hydrogenase (ferredoxin), subunit F.
  
 
 0.932
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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