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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB12684.1Hypothetical protein. (126 aa)    
Predicted Functional Partners:
AKB13050.1
Hypothetical protein.
  
 
 0.982
AKB12683.1
Uncharacterized protein involved in the oxidation of intracellular sulfur.
    
  0.974
AKB12685.1
Hypothetical protein.
 
     0.832
AKB12686.1
Hypothetical protein.
 
     0.690
AKB12941.1
CAAX amino terminal protease family protein.
 
     0.563
AKB13437.1
CAAX amino terminal protease family protein.
 
     0.556
AKB12735.1
Hypothetical protein.
  
     0.545
AKB12819.1
S-layer family duplication domain protein.
  
     0.523
AKB13432.1
CAAX amino terminal protease family protein.
 
     0.520
AKB11789.1
Thymidylate synthase.
 
     0.490
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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