Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB12698.1Response regulator receiver. (136 aa)    
Predicted Functional Partners:
AKB13590.1
Two-component response regulator.
 
 
 0.827
AKB12205.1
Sensory transduction histidine kinase.
   
 0.726
AKB12491.1
Sensory transduction histidine kinase.
   
 0.717
AKB12754.1
Sensory transduction histidine kinase.
 
   
 0.712
AKB12207.1
Sensory transduction histidine kinase.
 
   
 0.708
AKB13953.1
Sensory transduction histidine kinase.
 
   
 0.698
AKB13950.1
Sensory transduction histidine kinase.
 
   
 0.691
AKB12202.1
Sensory transduction histidine kinase.
   
 0.684
AKB11988.1
Sensory transduction histidine kinase.
 
   
 0.672
AKB13844.1
Sensory transduction histidine kinase.
 
   
 0.662
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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