Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
AKB12704.1Phosphoesterase. (332 aa)    
Predicted Functional Partners:
engB
GTP-binding protein EngB; Necessary for normal cell division and for the maintenance of normal septation.
 
     0.922
AKB11821.1
Single-stranded-DNA-specific exonuclease RecJ.
  
  
  0.917
AKB13037.1
Single-stranded-DNA-specific exonuclease RecJ.
     
  0.900
AKB13977.1
Hypothetical protein.
 
 
 
 0.739
AKB12486.1
Heteropolysaccharide repeat unit export protein.
 
    0.557
AKB12950.1
Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids.
 
    0.557
AKB12737.1
Hypothetical protein.
  
     0.516
polB
Archaeal DNA polymerase II small subunit; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3' to 5' direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase; Belongs to the DNA polymerase delta/II small subunit family.
  
 
 
 0.502
AKB12327.1
Hypothetical protein.
 
     0.492
AKB12322.1
Hypothetical protein.
  
     0.490
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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