STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB12725.12-hydroxyglutaryl-CoA dehydratase (Component D) related protein. (363 aa)    
Predicted Functional Partners:
AKB12726.1
Benzoyl-CoA reductase subunit BadG.
 
 0.992
AKB13284.1
Hypothetical protein.
 
 0.906
AKB11925.1
Hypothetical protein.
 
     0.546
AKB13574.1
Translation elongation factor 1 alpha-related protein.
 
     0.528
AKB12724.1
Hypothetical protein.
       0.513
AKB13050.1
Hypothetical protein.
  
    0.477
AKB12684.1
Hypothetical protein.
  
    0.401
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.