Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB12835.1Cell division protein FtsH. (774 aa)    
Predicted Functional Partners:
AKB11780.1
Cell division protein FtsH.
  
  
 
0.903
AKB13388.1
Cell division protein FtsH.
  
  
 
0.903
AKB12122.1
Deacetylase.
   
 0.870
AKB12142.1
Putative ankyrin repeat protein.
 
 
 0.818
rpl40e
LSU ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
  
 0.774
dnaK
Chaperone protein DnaK; Acts as a chaperone.
  
 0.756
AKB12630.1
WD-domain containing protein.
  
 
 0.737
AKB12400.1
Lipid A export ATP-binding/permease protein MsbA.
   
 0.733
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
    
 
 0.706
AKB12273.1
Peptidyl-prolyl cis-trans isomerase.
  
 
 0.701
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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