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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB12990.1Putative glycogen debranching enzyme, archaeal type, TIGR01561. (659 aa)    
Predicted Functional Partners:
AKB12330.1
Glycogen phosphorylase.
 
 
 0.795
AKB13241.1
Alpha-amylase.
 
  
 0.647
AKB13240.1
Alpha-amylase.
 
  
 0.644
AKB14295.1
1,4-alpha-glucan branching enzyme.
 
  
 0.631
AKB14187.1
Hypothetical protein.
 
 
 0.582
AKB12991.1
Hypothetical protein.
       0.528
AKB13243.1
Glucoamylase.
 
   
 0.521
AKB12989.1
Phosphoribosyl-AMP cyclohydrolase.
     
 0.487
AKB13023.1
Glucoamylase.
 
   
 0.454
AKB12487.1
Glycosyltransferase.
 
 
 0.442
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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