Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB13012.1Hypothetical protein. (524 aa)    
Predicted Functional Partners:
AKB13011.1
CobN component of cobalt chelatase involved in B12 biosynthesis.
       0.759
AKB13009.1
PQQ enzyme repeat domain protein.
       0.750
AKB13010.1
PQQ enzyme repeat domain protein.
       0.750
AKB13013.1
ATPase component of general energizing module of ECF transporters.
       0.657
AKB13008.1
Hypothetical protein.
       0.649
AKB13015.1
ABC transporter, ATP-binding protein.
       0.593
AKB13016.1
ABC transporter, permease protein.
       0.593
AKB13014.1
Transmembrane component of general energizing module of ECF transporters.
       0.592
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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