Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKB13060.1Glycosyltransferase. (376 aa)    
Predicted Functional Partners:
AKB13061.1
Polysaccharide deacetylase.
 
  
 0.950
AKB13059.1
Hypothetical protein.
  
  
 0.812
AKB14295.1
1,4-alpha-glucan branching enzyme.
  
 0.702
AKB14123.1
Glycosyl transferase, group 1.
  
     0.604
AKB12330.1
Glycogen phosphorylase.
  
 
 0.491
AKB14026.1
Geranylfarnesyl diphosphate synthetase; Belongs to the FPP/GGPP synthase family.
  
  
 0.471
AKB12929.1
dTDP-glucose 4,6-dehydratase.
 
  
 0.470
rnp4
Ribonuclease P protein component 4; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
  
    0.469
AKB14125.1
Glycosyltransferase.
  
     0.468
AKB13458.1
UDP-glucose dehydrogenase.
 
  
 0.464
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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