Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKB13116.1Iron-sulfur cluster assembly protein SufB. (320 aa)    
Predicted Functional Partners:
AKB13115.1
Iron-sulfur cluster assembly ATPase protein SufC.
 
 
 0.998
AKB13495.1
Iron-sulfur cluster assembly ATPase protein SufC.
 
 
 0.990
AKB12086.1
Cysteine desulfurase.
 
 
 0.844
AKB13806.1
Cysteine desulfurase.
 
 
 0.822
AKB13114.1
Putative adenosylcobinamide-phosphate guanylyltransferase CobY.
 
     0.680
AKB13112.1
Putative alpha-ribazole-5'-phosphate phosphatase CobZ.
     
 0.634
cobS
Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
       0.623
AKB11897.1
Scaffold protein.
  
  
 0.597
AKB12100.1
Scaffold protein.
  
  
 0.597
AKB13053.1
Scaffold protein.
  
  
 0.597
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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