Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB13242.1Hypothetical protein. (263 aa)    
Predicted Functional Partners:
AKB13243.1
Glucoamylase.
       0.789
AKB13554.1
Fe-S OXIDOREDUCTASE.
  
  
 0.701
AKB13801.1
(dimethylallyl)adenosine tRNA methylthiotransferase.
  
  
 0.701
AKB11798.1
Hypothetical protein.
  
     0.697
AKB13435.1
Hypothetical protein.
 
     0.696
AKB13454.1
Hypothetical protein.
 
     0.692
AKB11949.1
Hypothetical protein.
  
     0.673
AKB12924.1
Hypothetical protein.
  
     0.668
AKB12342.1
Hypothetical protein.
  
     0.665
AKB12946.1
Cell surface protein.
  
     0.657
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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