Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AKB13334.1HTH DNA-binding protein; Belongs to the UPF0251 family. (112 aa)    
Predicted Functional Partners:
AKB13280.1
Methyl coenzyme M reductase system component A2.
  
    0.930
AKB13335.1
Cytosolic Fe-S cluster assembling factor NBP35; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
 
    0.856
AKB12865.1
Hypothetical protein.
 
  
 0.756
AKB12862.1
Hypothetical protein.
 
     0.697
AKB12864.1
Putative transcriptional regulator.
 
  
 0.636
AKB12861.1
Nitrogenase reductase-like protein.
 
     0.625
AKB13226.1
Hypothetical protein.
 
  
 0.551
AKB13305.1
Putative ABC transporter ATP-binding protein.
  
    0.480
AKB13496.1
7,8 dihydropteroate synthase (methanopterin).
 
     0.441
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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