Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB13347.1Hypothetical protein. (280 aa)    
Predicted Functional Partners:
rpl40e
LSU ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
 
     0.732
AKB14092.1
NMD protein affecting ribosome stability and mRNA decay.
 
     0.716
mptD
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin (H2Neo) to 6-hydroxymethyl-7,8-dihydropterin (6-HMD).
 
     0.664
AKB14186.1
Hypothetical protein.
 
     0.656
AKB13559.1
Archaeosine tRNA-ribosyltransferase type 2.
  
     0.653
AKB13813.1
Signal peptidase, type IV - prepilin/preflagellin.
 
     0.634
AKB14101.1
NYN domain protein.
 
     0.604
AKB13250.1
Hypothetical protein.
  
     0.596
AKB13864.1
Glycerol dehydrogenase.
 
     0.592
AKB13863.1
Replication factor-A protein 1.
  
     0.586
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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