Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB13442.1Hypothetical protein. (353 aa)    
Predicted Functional Partners:
AKB13443.1
UDP-glucose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.743
AKB13464.1
Hypothetical protein.
 
     0.656
AKB13445.1
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.598
AKB13446.1
Acetyltransferase.
 
   
 0.594
AKB13744.1
Putative transcriptional regulators.
 
     0.555
AKB13460.1
Hypothetical protein.
 
     0.547
AKB13444.1
Myo-inositol 2-dehydrogenase.
 
     0.544
AKB12486.1
Heteropolysaccharide repeat unit export protein.
 
   
 0.508
AKB12950.1
Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids.
 
   
 0.508
AKB12936.1
Hypothetical protein.
 
     0.495
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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