Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKB13449.1Dolichol-phosphate mannosyltransferase. (299 aa)    
Predicted Functional Partners:
AKB13450.1
Mycofactocin system glycosyltransferase.
 
   
 0.773
AKB12937.1
Glycosyl transferase, family 2.
 
  
 0.494
AKB14230.1
ABC transporter.
 
  
 0.494
AKB13451.1
Hypothetical protein.
       0.425
AKB13061.1
Polysaccharide deacetylase.
  
  
 0.418
AKB14229.1
O-antigen export system permease protein RfbD.
 
  
 0.415
AKB13060.1
Glycosyltransferase.
 
  
 0.410
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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