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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB13460.1Hypothetical protein. (357 aa)    
Predicted Functional Partners:
AKB13461.1
Hypothetical protein.
 
     0.902
AKB13462.1
Glycosyltransferase.
 
     0.807
AKB13464.1
Hypothetical protein.
 
     0.674
AKB13463.1
Glycosyltransferase (group I).
       0.576
AKB13467.1
Hypothetical protein.
 
     0.571
AKB13442.1
Hypothetical protein.
 
     0.544
AKB13468.1
Hypothetical protein.
 
  
 0.438
AKB11915.1
Asparagine synthetase (glutamine-hydrolyzing).
     
 0.423
AKB13446.1
Acetyltransferase.
 
    0.423
AKB13443.1
UDP-glucose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
   
 0.403
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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