Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKB13483.1Phosphoserine phosphatase. (285 aa)    
Predicted Functional Partners:
AKB13482.1
Phosphoserine phosphatase.
    
 0.934
AKB13559.1
Archaeosine tRNA-ribosyltransferase type 2.
 
   
 0.798
AKB13864.1
Glycerol dehydrogenase.
 
     0.748
AKB14304.1
Replication protein A (two OB fold, one zinc finger).
 
     0.747
AKB14305.1
Glycerol dehydrogenase.
  
     0.745
AKB12054.1
Mov34 family protein.
  
     0.743
AKB12797.1
Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative.
       0.737
AKB12838.1
HTH DNA-binding protein.
 
     0.732
AKB12897.1
Hypothetical protein.
  
     0.722
AKB13278.1
Hypothetical protein.
  
     0.714
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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