Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB13549.1Hypothetical protein. (263 aa)    
Predicted Functional Partners:
AKB11883.1
Membrane protein, putative.
  
    0.796
AKB13431.1
Hypothetical protein.
 
    0.691
AKB13691.1
Proline 2-methylase for pyrrolysine biosynthesis.
  
    0.631
AKB12723.1
Hypothetical protein.
  
    0.522
AKB13518.1
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase.
  
     0.509
AKB13888.1
Hypothetical protein.
  
     0.508
AKB13656.1
Archaeosortase A.
  
    0.477
AKB13699.1
Hypothetical protein.
  
  
 0.474
AKB12545.1
Hypothetical protein.
 
  
 0.473
AKB12576.1
Kef-type transport system 2 (probable substrate potassium), subunit 1.
  
  
 0.441
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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