Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB13721.1CRISPR-associated protein. (458 aa)    
Predicted Functional Partners:
AKB13726.1
CRISPR-associated RAMP Cmr2.
 
     0.580
AKB11949.1
Hypothetical protein.
  
     0.557
AKB12301.1
Hypothetical protein.
  
     0.513
AKB13727.1
CRISPR-associated RAMP Cmr1.
  
     0.475
AKB14236.1
Hypothetical protein.
  
     0.452
AKB11798.1
Hypothetical protein.
  
     0.448
AKB13147.1
Hypothetical protein.
  
     0.424
AKB13435.1
Hypothetical protein.
  
     0.424
AKB13922.1
Hypothetical protein.
  
     0.424
AKB12327.1
Hypothetical protein.
  
     0.417
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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