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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB13722.1CRISPR-associated RAMP Cmr6. (315 aa)    
Predicted Functional Partners:
AKB13724.1
CRISPR-associated RAMP Cmr4.
 
 
 
 0.992
AKB13723.1
CRISPR-associated RAMP Cmr5.
 
 
 
 0.991
AKB13726.1
CRISPR-associated RAMP Cmr2.
 
 
 
 0.990
AKB13727.1
CRISPR-associated RAMP Cmr1.
 
 
 
 0.984
AKB13725.1
CRISPR-associated RAMP Cmr3.
 
   
 0.946
AKB13728.1
Hypothetical protein.
       0.582
AKB13729.1
Hypothetical protein.
       0.475
cas1
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.427
AKB13721.1
CRISPR-associated protein.
  
     0.417
AKB14247.1
CRISPR-associated helicase Cas3.
 
   
 0.405
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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