STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB13730.1Radical SAM domain heme biosynthesis protein. (384 aa)    
Predicted Functional Partners:
AKB13709.1
moaA/nifB/pqqE family protein.
 
     0.688
AKB12401.1
Radical SAM domain protein.
 
     0.687
AKB13484.1
Radical SAM domain protein.
  
     0.680
AKB13065.1
Tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein.
 
     0.604
AKB13358.1
Radical SAM domain protein.
 
     0.589
AKB13847.1
Heme biosynthesis protein related to NirL and NirH.
 
  
 0.585
AKB13846.1
Heme biosynthesis protein related to NirD and NirG.
 
  
 0.558
AKB13801.1
(dimethylallyl)adenosine tRNA methylthiotransferase.
 
  
 0.542
AKB14292.1
Radical SAM domain protein.
 
     0.538
AKB13731.1
Hypothetical protein.
       0.512
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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