Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKB13738.1Dipeptide transport ATP-binding protein DppD; TCDB 3.A.1.5.2. (337 aa)    
Predicted Functional Partners:
AKB13737.1
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 
 0.993
AKB13739.1
Dipeptide transport ATP-binding protein DppF; TCDB 3.A.1.5.2.
 
0.993
AKB13736.1
Dipeptide transport system permease protein DppB; TCDB 3.A.1.5.2.
 
 
 0.979
AKB12059.1
Oligopeptide transport system permease protein OppC; TCDB 3.A.1.5.1.
 
 0.960
AKB13735.1
Dipeptide-binding ABC transporter, periplasmic substrate-binding component; TCDB 3.A.1.5.2.
 
 
 0.904
AKB12060.1
Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1.
 
 
 0.891
AKB13734.1
Dipeptide-binding ABC transporter, periplasmic substrate-binding component; TCDB 3.A.1.5.2.
 
 
 0.854
AKB13377.1
ATPase component BioM of energizing module of biotin ECF transporter.
   
 0.838
lolD
Lipoprotein releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
   
0.811
AKB13256.1
ATPase component NikO of energizing module of nickel ECF transporter; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
   
0.793
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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