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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB13744.1Putative transcriptional regulators. (308 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
 
   
 0.836
AKB13251.1
RecB family exonuclease.
 
   
 0.708
AKB13808.1
Integral membrane protein.
 
     0.704
AKB13264.1
UbiA prenyltransferase family protein.
 
     0.689
AKB13464.1
Hypothetical protein.
  
     0.676
AKB12342.1
Hypothetical protein.
  
     0.668
AKB13813.1
Signal peptidase, type IV - prepilin/preflagellin.
 
   
 0.667
AKB13977.1
Hypothetical protein.
  
     0.661
AKB14227.1
Hypothetical protein.
  
     0.658
AKB11945.1
Putative carboxyl-terminal-processing protease, deltaproteobacterial.
 
     0.657
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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