Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKB13773.1Sugar phosphate isomerase/epimerase. (269 aa)    
Predicted Functional Partners:
AKB13578.1
Dephospho-CoA kinase archaeal, predicted; Belongs to the UPF0200 family.
  
    0.748
AKB13002.1
Phosphate transport system permease protein PstA; TCDB 3.A.1.7.1.
     
 0.625
AKB13444.1
Myo-inositol 2-dehydrogenase.
 
  
 0.549
AKB13244.1
Periplasmic serine protease.
       0.539
AKB13422.1
D-arabino-3-hexulose 6-phosphate formaldehyde lyase; Hypothetical protein with distant similarity to Ribonuclease E inhibitor RraA (former MenG).
 
  
 0.453
AKB14244.1
Hypothetical protein.
 
     0.430
AKB13786.1
Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase.
 
  
 0.422
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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