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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB13904.1Biotin synthase-related enzyme. (331 aa)    
Predicted Functional Partners:
AKB14133.1
Hypothetical protein.
 
     0.747
AKB14046.1
COG4004 family.
  
     0.632
AKB11932.1
OB-fold nucleic acid binding domain protein.
 
     0.624
AKB13621.1
Putative transcriptional regulator with an HTH domain protein.
  
     0.591
AKB11869.1
Hypothetical protein.
  
     0.588
AKB14077.1
Hypothetical protein.
  
     0.588
AKB12564.1
Hypothetical protein.
  
     0.566
AKB12098.1
Hypothetical protein.
  
     0.563
AKB13042.1
Hypothetical protein.
  
   
 0.541
AKB14276.1
Hypothetical protein.
  
     0.539
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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