Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKB13910.1Circadian phase modifier. (268 aa)    
Predicted Functional Partners:
AKB13909.1
Hypothetical protein; Belongs to the LarC family.
 
  
 0.988
AKB13803.1
ATP-utilizing enzyme of the PP-loop superfamily.
 
  
 0.960
AKB12732.1
Transcriptional regulator.
 
  
 0.710
AKB12733.1
Transcriptional regulator.
 
  
 0.708
AKB12731.1
Transcriptional regulator.
 
  
 0.706
dtdA
D-tyrosyl-tRNA(Tyr) deacylase; D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo.
       0.545
AKB13258.1
Substrate-specific component NikM of nickel ECF transporter.
 
    0.538
AKB13259.1
Additional substrate-specific component NikN of nickel ECF transporter.
 
    0.524
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
       0.515
AKB12821.1
Substrate-specific component CbiM of cobalt ECF transporter.
  
    0.461
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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