Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKB13913.1ABC transporter, permease protein. (371 aa)    
Predicted Functional Partners:
AKB13914.1
ABC transporter, ATP-binding protein.
 
 0.963
AKB13310.1
ABC transporter, ATP-binding protein.
 
 0.852
AKB13313.1
ABC transporter, ATP-binding protein.
 
 0.844
AKB12341.1
ABC transporter, ATP-binding protein.
 
 0.842
AKB12472.1
Cell division transporter, ATP-binding protein FtsE; TCDB 3.A.5.1.1.
 
 0.837
AKB11947.1
ABC transporter, ATP-binding protein.
 
 0.803
lolD
Lipoprotein releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
 
 0.793
AKB13435.1
Hypothetical protein.
 
   
 0.588
AKB13912.1
Hypothetical protein.
       0.577
AKB12559.1
Hypothetical protein.
 
 
 0.562
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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