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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB13921.1Putative transporter PduT for various metalloporphyrins. (207 aa)    
Predicted Functional Partners:
AKB13922.1
Hypothetical protein.
 
    0.957
AKB13920.1
Hypothetical protein.
 
  
 0.946
AKB13919.1
CobN-like chelatase BtuS for metalloporphyrine salvage.
 
  
 0.790
AKB13011.1
CobN component of cobalt chelatase involved in B12 biosynthesis.
 
  
 0.687
AKB13098.1
Iron(III) dicitrate transport ATP-binding protein.
 
  
 0.619
AKB12696.1
Hypothetical protein.
 
  
 0.615
AKB11915.1
Asparagine synthetase (glutamine-hydrolyzing).
  
  
 0.554
AKB13590.1
Two-component response regulator.
     
 0.551
AKB13097.1
Iron(III) dicitrate transport system permease protein.
  
  
 0.534
AKB13096.1
Iron(III) dicitrate-binding protein.
  
  
 0.530
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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