Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB13922.1Hypothetical protein. (230 aa)    
Predicted Functional Partners:
AKB13921.1
Putative transporter PduT for various metalloporphyrins.
 
    0.986
AKB13920.1
Hypothetical protein.
 
     0.964
AKB12735.1
Hypothetical protein.
  
    0.583
AKB14102.1
Putative methanogenesis marker protein 12; Belongs to the UPF0285 family.
  
     0.570
AKB13919.1
CobN-like chelatase BtuS for metalloporphyrine salvage.
 
    0.566
AKB13436.1
Hypothetical protein.
  
     0.557
pfkC
ADP-dependent phosphofructokinase; Catalyzes the phosphorylation of fructose 6-phosphate to fructose 1,6-bisphosphate using ADP as the phosphate donor.
  
     0.547
AKB13312.1
Putative carboxyl-terminal-processing protease, deltaproteobacterial.
  
     0.538
AKB12816.1
ADP-dependent glucokinase.
  
     0.507
AKB12134.1
Hypothetical protein.
  
     0.489
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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