Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AKB13995.1Phosphoserine phosphatase. (319 aa)    
Predicted Functional Partners:
AKB13996.1
Hypothetical protein.
       0.915
AKB13997.1
Hypothetical protein.
 
     0.891
AKB13998.1
DNA replication helicase protein MCM; Belongs to the MCM family.
       0.805
AKB12797.1
Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative.
       0.737
AKB13999.1
tRNA:Cm32/Um32 methyltransferase.
       0.658
AKB14266.1
Hypothetical protein.
  
     0.658
AKB14267.1
Hypothetical protein.
  
     0.648
AKB13559.1
Archaeosine tRNA-ribosyltransferase type 2.
 
   
 0.608
rnp4
Ribonuclease P protein component 4; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
 
     0.586
AKB13312.1
Putative carboxyl-terminal-processing protease, deltaproteobacterial.
  
     0.577
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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