Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB14189.1Glycosyltransferase. (603 aa)    
Predicted Functional Partners:
AKB14188.1
Galactose-1-phosphate uridylyltransferase.
       0.871
AKB13240.1
Alpha-amylase.
 
     0.600
AKB13241.1
Alpha-amylase.
 
     0.583
AKB14187.1
Hypothetical protein.
 
     0.524
AKB12941.1
CAAX amino terminal protease family protein.
  
     0.514
AKB13437.1
CAAX amino terminal protease family protein.
  
     0.510
AKB13432.1
CAAX amino terminal protease family protein.
  
     0.506
AKB12382.1
Hypothetical protein.
  
     0.498
AKB12819.1
S-layer family duplication domain protein.
  
     0.470
AKB13447.1
CAAX amino terminal protease family protein.
  
     0.464
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.