Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKB14229.1O-antigen export system permease protein RfbD. (101 aa)    
Predicted Functional Partners:
AKB14230.1
ABC transporter.
 
 
 0.999
AKB14231.1
Hypothetical protein.
 
     0.892
AKB14232.1
Hypothetical protein.
 
  
 0.877
AKB14233.1
Glycosyl transferase group 1.
  
  
 0.829
AKB12096.1
Serine acetyltransferase; PaaD-like protein (DUF59) involved in Fe-S cluster assembly.
       0.732
AKB12937.1
Glycosyl transferase, family 2.
 
  
 0.717
AKB12086.1
Cysteine desulfurase.
       0.543
AKB14228.1
Mannosyltransferase WbkA.
 
  
 0.468
AKB12929.1
dTDP-glucose 4,6-dehydratase.
 
   
 0.465
AKB13443.1
UDP-glucose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.420
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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