Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB14260.1Cell surface protein. (444 aa)    
Predicted Functional Partners:
AKB12883.1
Peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
 
 0.636
AKB12483.1
Hypothetical protein.
  
    0.547
AKB12938.1
Glycosyltransferase (family 2).
  
    0.547
AKB12953.1
Glycosyltransferase (family 2).
  
    0.547
AKB13439.1
Dolichyl-phosphate beta-D-mannosyltransferase.
  
    0.547
AKB13440.1
Glycosyltransferase (family 2).
  
    0.547
rnp3
Ribonuclease P protein component 3; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family.
       0.542
AKB13109.1
Serine protease.
  
 
 0.428
AKB14261.1
Hypothetical protein.
       0.425
AKB12221.1
Hypothetical protein; Belongs to the peptidase S8 family.
  
 
 0.402
Your Current Organism:
Methanosarcina thermophila
NCBI taxonomy Id: 523844
Other names: M. thermophila TM-1, Methanosarcina thermophila OCM 12, Methanosarcina thermophila TM-1, Methanosarcina thermophila str. TM-1, Methanosarcina thermophila strain TM-1
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