STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mfer_0117Polymorphic outer membrane protein; InterPro IPR011050: IPR003368; KEGG: mst:Msp_1103 asn/thr-rich large protein family protein; PFAM: Polymorphic membrane protein Chlamydia; SPTR: P27373 Cell surface glycoprotein; TIGRFAM: polymorphic outer membrane protein; PFAM: Chlamydia polymorphic membrane protein (Chlamydia_PMP); TIGRFAM: Chlamydial polymorphic outer membrane protein repeat. (489 aa)    
Predicted Functional Partners:
Mfer_0118
Methyltransferase; COGs: COG2263 RNA methylase; InterPro IPR002052: IPR010456; KEGG: msi:Msm_0764 ribosomal L11 RNA methyltransferase (SAM-dependent); PFAM: ribosomal L11 methyltransferase; SPTR: B9AE95 Putative uncharacterized protein; PFAM: Putative RNA methylase family UPF0020.
       0.471
Your Current Organism:
Methanothermus fervidus
NCBI taxonomy Id: 523846
Other names: M. fervidus DSM 2088, Methanothermus fervidus ATCC 43054, Methanothermus fervidus DSM 2088, Methanothermus fervidus V24S, Methanothermus fervidus str. DSM 2088, Methanothermus fervidus strain DSM 2088
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.