STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mfer_0216Conserved hypothetical protein; COGs: COG5643 Protein containing a metal-binding domain shared with formylmethanofuran dehydrogenase subunit E; KEGG: mth:MTH1346 hypothetical protein; SPTR: O27400 Putative uncharacterized protein; PFAM: FmdE, Molybdenum formylmethanofuran dehydrogenase operon. (932 aa)    
Predicted Functional Partners:
Mfer_0215
InterPro IPR000620; KEGG: mth:MTH841 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: O26929 Uncharacterized transporter MTH_841; PFAM: EamA-like transporter family.
       0.528
Mfer_0217
Protein of unknown function DUF1002; COGs: COG4086 secreted protein; InterPro IPR009343; KEGG: mth:MTH1038 hypothetical protein; PFAM: protein of unknown function DUF1002; SPTR: O27117 Conserved protein; PFAM: Protein of unknown function (DUF1002).
       0.526
Mfer_0218
KEGG: mth:MTH1037 hypothetical protein; SPTR: O27116 Putative uncharacterized protein.
       0.526
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
       0.400
Your Current Organism:
Methanothermus fervidus
NCBI taxonomy Id: 523846
Other names: M. fervidus DSM 2088, Methanothermus fervidus ATCC 43054, Methanothermus fervidus DSM 2088, Methanothermus fervidus V24S, Methanothermus fervidus str. DSM 2088, Methanothermus fervidus strain DSM 2088
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