STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mfer_0498Daunorubicin resistance ABC transporter, inner membrane subunit B; InterPro IPR000412: IPR013526: IPR005942: IPR013525; KEGG: mth:MTH1092 hypothetical protein; PFAM: ABC-2 type transporter; SPTR: O27164 Putative membrane protein; TIGRFAM: daunorubicin resistance ABC transporter, inner membrane subunit B; PFAM: ABC-2 type transporter; TIGRFAM: daunorubicin resistance ABC transporter membrane protein. (254 aa)    
Predicted Functional Partners:
Mfer_0499
Daunorubicin resistance ABC transporter ATPase subunit; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593: IPR005894; KEGG: mth:MTH1093 ABC transporter (ATP-binding protein); PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: O27165 ABC transporter (ATP-binding); TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter; TIGRFAM: daunorubicin resistance ABC transporter ATP-binding subunit.
  
 0.973
Mfer_0996
Daunorubicin resistance ABC transporter ATPase subunit; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593: IPR017871: IPR005894; KEGG: mth:MTH1487 ABC transporter (ATP-binding protein); PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: O27531 ABC transporter (ATP-binding); TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter; TIGRFAM: daunorubicin resistance ABC transporter ATP-binding subunit.
  
 0.855
Mfer_0408
ABC transporter related protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593: IPR017871; KEGG: mth:MTH1370 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: O27423 ABC transporter (ATP-binding protein); PFAM: ABC transporter.
  
 0.803
Mfer_0279
COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: tye:THEYE_A1034 nitroreductase family protein; PFAM: nitroreductase; SPTR: B5YKU7 Nitroreductase family protein; PFAM: Nitroreductase family.
  
  
 0.785
Mfer_0497
KEGG: mth:MTH660 hypothetical protein; SPTR: O26756 Putative uncharacterized protein.
       0.705
Mfer_0482
COGs: COG1944 conserved hypothetical protein; InterPro IPR017667: IPR003776; KEGG: mth:MTH987 hypothetical protein; PFAM: protein of unknown function DUF181; SPTR: O27068 UPF0142 protein MTH_987; TIGRFAM: methanogenesis marker protein 1; PFAM: YcaO-like family; TIGRFAM: uncharacterized domain; putative methanogenesis marker protein 1; bacteriocin biosynthesis docking scaffold, SagD family.
  
  
 0.689
truD
tRNA pseudouridine synthase D TruD; Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
       0.657
Mfer_1046
Abortive infection protein; InterPro IPR003675; KEGG: mth:MTH1189 hypothetical protein; PFAM: Abortive infection protein; SPTR: O27257 Conserved protein; PFAM: CAAX amino terminal protease family.
  
  
 0.636
Mfer_0495
Predicted aconitase subunit 2; COGs: COG1786 conserved hypothetical protein; InterPro IPR012016: IPR002840; KEGG: mth:MTH1530 hypothetical protein; PFAM: protein of unknown function DUF126; SPTR: O27573 UPF0107 protein MTH_1530; PFAM: Protein of unknown function DUF126; Belongs to the UPF0107 family.
       0.610
Mfer_0468
COGs: COG1819 Glycosyl transferase related to UDP-glucuronosyltransferase; InterPro IPR005262: IPR001173: IPR007235; KEGG: mth:MTH884 teichoic acid biosynthesis related protein; PFAM: glycosyl transferase family 2; Glycosyltransferase 28 domain; SPTR: O26970 Teichoic acid biosynthesis related protein; PFAM: Glycosyltransferase family 28 C-terminal domain; Glycosyl transferase family 2; TIGRFAM: conserved hypothetical protein.
  
  
 0.579
Your Current Organism:
Methanothermus fervidus
NCBI taxonomy Id: 523846
Other names: M. fervidus DSM 2088, Methanothermus fervidus ATCC 43054, Methanothermus fervidus DSM 2088, Methanothermus fervidus V24S, Methanothermus fervidus str. DSM 2088, Methanothermus fervidus strain DSM 2088
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